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Species belonging to selected taxon:
Citrus sinensis
ABOUT THIS RECORD
ID:
MNEST045811
species:
Citrus sinensis
miRNA family:
MIR396
source:
microPC, original name:
miR396
Taxonomy by NCBI:
Citrus sinensis
Citrus
Rutaceae
Sapindales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTCCACAGCTTTCTTGAACT
miRNA*
TTCAAGAAATCTGTGGGA
mismatches:
1
bulges:
0
View larger
pre-miRNA
TTCCACAGCTTTCTTGAACT
TCTTTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTAATAATAGG
CTACGATTTGATGTGGCTAGCTGCAGCTATTAGAAG
TTCAAGAAATCTGTGGGA
dot-bracket secondary structure
((((((((.(((((((((((
(((...........................................................................((
(((((......)))))))(((....)))...)))))
))))))))).))))))))
SIMILARITIES
miRBase
csi-MIR396c
:
4e-32
PMRD
no hits
microPC
miR396
:
4e-32
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
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